Split Proximity Labeling Proteomics Service

Creative Proteomics provides Split Proximity Labeling Proteomics Service for researchers who need to map protein neighborhoods that appear only when a defined interaction, contact site, or condition-specific proximity event occurs.

We help you evaluate Split-TurboID or Split-APEX feasibility, review bait-prey design and controls, enrich labeled proteins, acquire LC-MS/MS data, and interpret reconstitution-dependent candidates.

This service is designed for projects where full-length proximity labeling may be too broad. Instead of asking only “what proteins are near this bait?”, split proximity labeling helps answer a more specific question: what proteins become proximal when this protein pair, organelle contact, membrane event, or drug-induced interaction state is formed?

Service strengths

  • Map interaction-dependent protein neighborhoods
  • Support Split-TurboID and Split-APEX project designs
  • Review fragment orientation, localization, and controls
  • Analyze enriched biotinylated proteins by LC-MS/MS
  • Deliver candidate ranking, QC summaries, and pathway interpretation
Split proximity labeling proteomics workflow showing split enzyme reconstitution, biotin labeling, enrichment, LC-MS/MS, and candidate analysis.
Interaction-Dependent Labeling Capabilities Workflow Constructs & Controls Comparison Applications Sample Deliverables Demo Evidence FAQ References Disclaimer

Capture Protein Neighborhoods Only When Specific Interactions Occur

Split proximity labeling uses two inactive enzyme fragments that regain activity only when they are brought close enough by a biological event. In a typical design, one fragment is fused to one protein, organelle marker, or membrane-localized component, while the other fragment is fused to a second partner. When the two partners come together, the split enzyme can reconstitute activity and label nearby proteins.

This design is helpful when the research question is not simply bait-centered, but interaction-centered. You may want to capture proteins near a protein pair only when the pair interacts, proteins near an organelle contact site only when membranes are closely apposed, or local proteins that shift after drug treatment, mutation, or stimulation.

We interpret split proximity labeling data with care. The LC-MS/MS output represents a reconstitution-dependent proximal proteome. It can identify proteins near the interaction or contact event, but it does not prove that every detected protein directly binds the bait or prey. We help you plan controls and background filtering so the dataset supports candidate prioritization and follow-up validation.

What Split Proximity Labeling Detects

Split-TurboID or Split-APEX proteomics can identify:

  • Proteins enriched near a defined protein-pair interaction
  • Proteins associated with organelle or membrane contact sites
  • Local proteins that appear when a signaling complex forms
  • Proteins that change proximity after drug treatment or stimulation
  • Candidate regulators near interaction-dependent microenvironments
  • Contact-site or condition-dependent proximal protein networks

Why Split Enzymes Add Specificity

Full-length APEX, TurboID, or BioID can label proteins near a bait or compartment even when a specific interaction is not occurring. Split systems add another layer of control because labeling depends on fragment proximity and enzyme reconstitution.

This does not mean background disappears. Fragment orientation, expression level, localization, linker design, and controls all affect specificity. A well-designed split proximity labeling project should include controls that test whether labeling is truly driven by the intended interaction or contact event.

How to Interpret Reconstitution-Dependent Evidence

A strong candidate is usually supported by enrichment over control, consistency across replicates, and biological relevance to the protein pair, contact site, treatment condition, or pathway state. For direct-binding or functional conclusions, top candidates should be validated by orthogonal methods such as Co-IP, imaging, mutagenesis, targeted MS, functional perturbation, or structural MS.

Our Split-TurboID and Split-APEX Proteomics Capabilities

We support split proximity labeling projects from design review to LC-MS/MS data delivery and bioinformatics interpretation. If you already have a Split-TurboID, Split-APEX, or related split-enzyme model, we can review the available material and focus on enrichment proteomics and analysis. If the project is still being designed, we can help you evaluate whether a split strategy is the right fit.

Protein Pair–Triggered Proximity Proteomics

For protein-pair studies, we review whether the bait-prey design is suitable for reconstitution-dependent labeling. This includes the two proteins of interest, split fragment placement, linker strategy, known interaction information, expected localization, and planned comparison groups.

This application fits projects where the goal is to capture proteins near a specific interaction event rather than all proteins near one full-length bait fusion.

Organelle and Membrane Contact Site Proteomics

Split proximity labeling can address contact-site questions when two membranes, organelles, or subcellular regions come into close apposition. This may include ER-mitochondria contact sites, receptor-associated membrane regions, organelle-organelle interfaces, or other local cellular junctions.

For these studies, localization evidence and control design are especially important. If either split fragment is mistargeted, the final protein profile may reflect the wrong cellular region.

Drug-, Mutation-, or Stimulus-Dependent Interaction Studies

Many interactions are condition-dependent. A protein pair may come together after pathway stimulation, compound treatment, mutation, stress, or time-sensitive signaling activation. Split proximity labeling lets you compare local proximal proteomes between states when the experimental design includes matched controls and replicates.

  • Drug-treated vs control cells
  • Stimulated vs baseline cells
  • Mutant vs wild-type systems
  • Interaction-on vs interaction-off conditions
  • Contact-enhanced vs contact-disrupted systems
  • Time-sensitive pathway assembly studies

Client-Prepared Construct or Sample LC-MS/MS Analysis

Some research teams already have split constructs, engineered cells, labeled samples, enriched proteins, or lysates. We review the construct design, labeling history, enrichment status, controls, and replicate information before LC-MS/MS acquisition.

This review helps define what the data can support and where interpretation should remain cautious. It also reduces the risk of treating background labeling or overexpression-driven signal as true interaction-dependent enrichment.

Feasibility Review for Split Fragment Design and Controls

Before sample submission, we can review bait and prey identities, Split-TurboID or Split-APEX design, N- or C-terminal fragment placement, linker and tag information, expression system, cell model, localization evidence, controls, perturbation design, biological replicate plan, and expected outputs.

This feasibility review is important because split systems are design-sensitive. Small changes in orientation, localization, or expression can change the labeling pattern.

Split Proximity Labeling Workflow with QC Checkpoints

Our workflow connects the technical process with the service process, from project review to final data interpretation. At each step, we ask whether the data will truly reflect the intended interaction, contact site, or condition-dependent proximity event.

1

Bait-Prey or Contact-Site Design Review

We begin by reviewing the biological question. Are you studying a known protein pair, a suspected interaction, a membrane contact site, a receptor microdomain, or a drug-induced complex? We also review the expected interaction condition and comparison groups.

QC focus: Is the split proximity labeling design aligned with the biological question?

2

Split Fragment Orientation and Localization Check

The placement of split enzyme fragments can strongly affect reconstitution and labeling. We review whether each fragment is placed at the N-terminus or C-terminus, whether linkers may be needed, and whether the fusion design may disrupt the interaction or localization.

QC focus: Are fragment orientation and localization likely to preserve the intended interaction or contact event?

3

Labeling and Reconstitution Condition Review

Split systems require conditions that allow meaningful reconstitution without excessive background. If the study includes treatment, mutation, or stimulation, the timing of the biological event and labeling window must be coordinated.

QC focus: Does the labeling condition reflect the intended interaction state rather than nonspecific proximity or overexpression?

4

Biotinylated Protein Enrichment

After labeling, cells or prepared material are processed for enrichment. Biotinylated proteins are captured using streptavidin-based enrichment. Controls help reveal nonspecific enrichment, single-fragment background, and broadly labeled proteins.

QC focus: Is enrichment specific enough to support LC-MS/MS analysis and background filtering?

5

LC-MS/MS Acquisition

Enriched proteins are digested into peptides and analyzed by LC-MS/MS. The acquisition plan depends on sample type, abundance, comparison design, and whether the project is discovery-focused or comparison-focused.

QC focus: Are MS signal quality, peptide recovery, and sample consistency suitable for downstream analysis?

6

Reconstitution-Dependent Candidate Ranking

We process the proteomics data to identify proteins enriched in the reconstituted or interaction-positive condition. For comparative studies, we evaluate changes between interaction-on and interaction-off states, treated and control groups, or mutant and wild-type systems.

QC focus: Are candidates supported by controls, enrichment strength, replicate consistency, and biological context?

Vertical Split-TurboID and Split-APEX proximity labeling proteomics workflow with QC checkpoints.

Designing Constructs and Controls for Split Proximity Labeling

Split proximity labeling is powerful, but the design has to be handled carefully. The most common problems are not caused by LC-MS/MS itself. They often come from construct orientation, fragment placement, weak localization evidence, missing controls, or overinterpretation of proximal candidates.

Construct Information to Prepare

Design ItemWhy It Matters
Bait and prey namesDefines the intended interaction or contact event
Split systemIndicates whether the project uses Split-TurboID, Split-APEX, or another split-enzyme design
Fragment placementN- or C-terminal placement can affect reconstitution and interaction preservation
Linker informationLinker length and flexibility may influence fragment proximity
Tag and vector designExpression and detection tags can affect localization or protein behavior
Cell modelDetermines labeling feasibility, sample handling, and interpretation limits
Localization evidenceHelps confirm whether each fusion reaches the expected region
Treatment or stimulation planDefines the biological state being compared
Replicate planSupports statistical comparison and confidence in candidate ranking

Control Types We Look For

Control TypeWhat It Helps Test
Single-fragment controlMeasures background from one split fragment alone
Empty-vector or tag-only controlHelps detect nonspecific enrichment or vector-related background
Interaction-deficient mutantTests whether labeling depends on the intended interaction
Localization-matched controlHelps separate local background from specific reconstitution
Untreated or vehicle controlSupports drug-treated or stimulated comparisons
Interaction-off conditionHelps identify candidates enriched only when the interaction occurs
Biological replicatesSupports reproducibility and candidate confidence
Enrichment QC controlHelps evaluate streptavidin capture and sample consistency

Common Design Risks That Affect Interpretation

  • Split fragments placed too far from the interaction interface
  • Fusion tags that disrupt interaction or localization
  • Overexpression that drives non-physiological proximity
  • Weak or missing localization evidence
  • Missing single-fragment controls
  • No interaction-deficient or interaction-off comparison
  • Uneven treatment timing across groups
  • Interpreting all proximal candidates as direct binders

We help you identify these risks before LC-MS/MS analysis whenever possible.

Split Proximity Labeling vs Full-Length Proximity Labeling, Co-IP-MS, AP-MS, and Interaction Assays

No single method answers every protein-interaction question. Split proximity labeling is strongest when labeling should depend on a defined interaction or contact event. Other methods may be better when the question is stable binding, direct interaction reporting, or structural distance.

MethodWhat It MeasuresBest FitStrengthsKey LimitationsWhen We Would Consider It
Split-TurboID / Split-APEXProteins labeled after split enzyme fragments reconstitute near a defined interaction or contact eventInteraction-dependent or contact-site-dependent proximal proteomicsAdds specificity to protein-pair or contact-site questions; supports LC-MS/MS discoveryConstruct-sensitive; requires strong controls; candidates are proximal proteins, not automatically direct bindersWhen labeling should depend on a defined interaction, contact, treatment, or pathway state
Full-length TurboID / APEX / BioIDProteins near a bait or compartment regardless of a specific pairwise eventBait-centered or compartment-centered proximity mappingBroader labeling field; simpler construct logicMay label many local proteins even when the interaction of interest is absentWhen the goal is broad bait-neighborhood or organelle-neighborhood discovery
Co-IP-MS / pull-down MSProteins retained with bait after extraction and purificationStable complexesUseful for stable interaction validationWeak, transient, membrane-associated, or condition-sensitive interactions may be lostWhen stable complex recovery is expected
AP-MSAffinity-purified bait-associated proteinsStable interactome profilingFamiliar workflow for bait-associated complexesLess suited for local contact sites or short-lived eventsWhen bait purification is robust and stable complexes are likely
BiFC / FRET / split luciferaseInteraction reporting or imaging-style readoutYes/no interaction testing, localization, or live-cell reporter studiesCan support direct interaction or proximity reportingUsually does not provide proteome-wide candidate discoveryWhen the main goal is reporter-based interaction evidence
Crosslinking MSCrosslinked protein contacts or distance-constrained informationStructural or complex-level interaction evidenceAdds distance-informed supportMore complex analysis and often lower coverageWhen structural contact information is needed

Split-TurboID / Split-APEX vs Full-Length TurboID or APEX

Full-length enzymes are useful when the goal is to map proteins near a bait or compartment broadly. Split systems are more suitable when labeling should depend on two components coming together. This makes split proximity labeling attractive for protein-pair interactions, contact sites, and condition-triggered proximity changes.

Split Proximity Labeling vs Co-IP-MS and AP-MS

Co-IP-MS and AP-MS are valuable when stable protein complexes can survive extraction and purification. Split proximity labeling is more suitable when the interaction is weak, transient, membrane-associated, local, or condition-dependent.

Split Proximity Labeling vs BiFC, FRET, and Split Luciferase

BiFC, FRET, and split luciferase can help report whether two proteins are close or interacting. Split proximity labeling adds another layer: it can identify proteins near the reconstituted interaction event by LC-MS/MS. This makes it useful when the goal is not only to detect interaction, but also to discover the local protein environment around that interaction.

Selection Rules by Research Goal

Use split proximity labeling when:

  • Labeling should depend on a specific protein-pair or contact-site event
  • You need LC-MS/MS discovery around an interaction-positive state
  • You want to compare drug-treated vs control or mutant vs wild-type proximity
  • Conventional pull-down may lose the interaction during extraction
  • Full-length proximity labeling may be too broad

Consider another approach when:

  • You only need a yes/no interaction reporter
  • You need direct binding proof rather than proximal candidate discovery
  • You expect a stable complex that can be purified
  • You need structural distance information
  • Your project lacks a defined bait-prey, contact-site, or condition-dependent design

For related workflows, we may also consider Proximity labeling proteomics, APEX Proximity Labeling Proteomics Service, chemical cross-linking mass spectrometry, or Proteome-wide thermal stability profiling depending on the biological question.

Applications for Interaction-Dependent Proximity Proteomics

Split proximity labeling is most useful when the biological question depends on a defined interaction or contact state. We support projects where protein proximity changes with location, pathway state, compound treatment, mutation, or cellular condition.

Protein Pair Interaction-Dependent Labeling

For protein-pair studies, split proximity labeling can help identify proteins near the interaction-positive state. This is useful when a known or suspected pair may recruit additional regulators, scaffolds, enzymes, or complex-associated proteins.

Organelle and Membrane Contact Site Proteomics

Organelle contact sites are difficult to isolate by conventional biochemical methods. Split proximity labeling can support contact-dependent labeling at membrane interfaces, organelle-organelle junctions, or receptor-proximal membrane regions when the design and controls are appropriate.

Drug- or Stimulus-Induced Interaction Changes

For chemical biology and drug mechanism studies, split proximity labeling can compare how local protein environments change after compound treatment, stimulation, pathway activation, or inhibition. These results can support mechanism exploration when combined with other MS-based approaches such as photoaffinity labeling MS, Activity-based protein profiling, or Competitive ABPP.

Signaling Complex and Pathway Assembly Studies

Some signaling complexes form only after stimulation or in specific subcellular regions. Split proximity labeling can help map proximal proteins near the assembly event, especially when the complex is too transient or fragile for standard purification.

Receptor and Membrane Microdomain Studies

For membrane receptors, adapter proteins, or local signaling regions, split proximity labeling can provide a more event-centered view than broad whole-cell proteomics. This may help identify proteins near receptor engagement, membrane contact, or pathway activation states.

Sample Requirements and Project Intake Checklist

Split proximity labeling projects depend heavily on construct design, cell model, labeling history, and whether the submitted material is cells, pellets, lysates, enriched proteins, or prepared peptides. The table below provides practical starting points based on general proteomics sample submission guidance and split-system project intake needs.

Sample / Material TypeRecommended Amount or InputStorage / ShippingKey Notes
Cultured cells for standard quantitative proteomics5 × 106 cells for label-free analysis; 1 × 107 cells for DIA-style workflowsFrozen cell pellet; ship on dry iceKeep cell numbers consistent across groups
Trace cell proteomics sample200–5,000 cellsFrozen low-bind tube where applicableFeasibility review required before submission
Animal soft tissue100 mg for label-free; 200 mg for DIA-style workflowsFlash-freeze; ship on dry iceRecord tissue source and handling history
Animal hard tissue200 mg for label-free; 300–500 mg for DIA-style workflowsFlash-freeze; ship on dry iceDiscuss homogenization needs before submission
Plasma / serum / CSF without high-abundance protein depletion20 μLFreeze and ship on dry iceAvoid hemolysis and repeated freeze-thaw cycles
Plasma / serum / CSF with high-abundance protein depletion50–100 μL for label-free; 100 μL for DIA-style workflowsFreeze and ship on dry iceEDTA plasma may be preferred for depletion workflows
Pure protein or enriched protein material150 μg for label-free; 300 μg for DIA-style workflowsKeep frozen unless otherwise discussedProvide buffer and preparation details
Cell culture supernatant10 mL for label-free; 20 mL for DIA-style workflowsFreeze and ship on dry iceSerum-containing medium may complicate interpretation
FFPE material10 slices for label-free; 15–20 slices for DIA-style workflowsShip under agreed conditionsEach slice: about 10 μm thickness and 1.5 × 2 cm area

What to Prepare Before Submission

  • Bait and prey protein names
  • Split enzyme system and fragment design
  • N- or C-terminal fragment placement
  • Linker, tag, and vector information
  • Cell type and expression system
  • Localization evidence for both fusions
  • Labeling condition and sample handling history
  • Single-fragment, interaction-off, or mutant controls
  • Treatment, stimulation, or mutation design
  • Biological replicate plan
  • Whether enrichment has already been performed
  • Expected comparison groups and biological question

Split Construct, Control, and Treatment Information

Strong split proximity labeling starts before MS analysis. If the construct design or controls are incomplete, the dataset may be difficult to interpret even if the LC-MS/MS run performs well. We therefore encourage clients to share the design before sample preparation whenever possible.

LC-MS/MS Deliverables and Bioinformatics Analysis

A useful split proximity labeling dataset should show which proteins are enriched when the split enzyme is reconstituted, how consistent the enrichment is, and whether the candidates change across conditions. We help organize the data into a report-ready package that supports review and follow-up planning.

Minimum DeliverablesOptional Bioinformatics Add-OnsCandidate Prioritization Factors
  • Raw LC-MS/MS data files
  • Protein identification table
  • Protein quantification table
  • Reconstitution-dependent candidate protein list
  • Background-filtered enrichment table
  • Sample-level QC summary
  • Enrichment QC summary
  • Volcano plot or heatmap-ready result table
  • Methods and parameter summary
  • Differential proximity enrichment analysis
  • Interaction-on vs interaction-off comparison
  • Drug-treated vs control comparison
  • Mutant vs wild-type comparison
  • GO enrichment analysis
  • KEGG / Reactome pathway enrichment
  • Protein interaction network visualization
  • Localization or contact-site marker review
  • Candidate prioritization for follow-up validation
  • Enrichment over single-fragment or interaction-off controls
  • Detection consistency across replicates
  • Condition-dependent proximity change
  • Known localization or pathway relevance
  • Background or contaminant risk
  • Biological fit with the bait-prey pair, contact site, or perturbation

This helps turn a long protein list into a focused set of candidates for follow-up validation.

Demo Results: What Split Proximity Proteomics Data Can Show

The examples below describe typical result types. They are representative output formats, not claims about a specific project result.

Representative split proximity labeling proteomics result showing reconstitution-dependent candidate ranking.

Reconstitution-Dependent Candidate Ranking

A ranked candidate table or bar chart can show proteins enriched when split enzyme activity is reconstituted.

  • Protein ID
  • Gene name
  • Enrichment value
  • Replicate support
  • Control comparison
  • Candidate priority group
  • Annotation notes
Representative split proximity labeling proteomics result showing differential proximity enrichment.

Differential Proximity Enrichment Across Conditions

For interaction-on vs interaction-off, treatment-control, stimulated-baseline, or mutant-wild-type designs, a volcano plot or heatmap can show proteins with condition-dependent enrichment.

  • Group comparison table
  • Up-enriched and down-enriched candidates
  • Replicate-level consistency view
  • Statistical comparison where design allows
Representative split proximity labeling proteomics result showing contact-site and pathway network interpretation.

Contact-Site or Pathway Network Interpretation

For protein-pair or organelle-contact studies, candidates can be arranged into a network centered on the interaction or contact site. Pathway enrichment can help identify themes such as membrane organization, signaling regulation, protein transport, or complex assembly.

Literature Evidence for Split Proximity Labeling

Split proximity labeling is supported by published studies showing that split enzyme fragments can restrict labeling to defined interaction or contact events. This evidence is useful for project design, but it should not be interpreted as a guarantee that every split system will perform the same way. Construct orientation, linker design, expression level, localization, controls, and biological context all affect the final dataset.

A key Split-TurboID study showed that inactive TurboID fragments could be brought together through protein-protein interaction or membrane-membrane apposition, enabling contact-dependent proximity labeling in cells. In ER-mitochondria contact-site experiments, the study reported identification of more than 100 endogenous proteins and validation of selected candidates. This supports the use of split proximity labeling for contact-site-centered proteomics, while also highlighting the importance of careful system design and validation.

Protocol literature also describes how TurboID and Split-TurboID can be used in mammalian cells for proximity labeling, enrichment, mass spectrometry acquisition, and proteomic data analysis. These workflows provide useful guidance for designing split proximity labeling experiments, especially when the goal is to connect a specific protein-pair or contact-site event with LC-MS/MS-based candidate discovery.

For Split-APEX, the current public evidence base is less service-oriented than Split-TurboID, but APEX-family proximity labeling literature supports the broader concept of peroxidase-based proximity proteomics. For this reason, we position Split-APEX as a feasibility-reviewed option rather than a one-size-fits-all workflow. Before starting a project, we review the intended interaction pair, fragment placement, labeling conditions, controls, and expected output to determine whether Split-APEX, Split-TurboID, full-length proximity labeling, or another interaction method is the better fit.

This literature-based evidence supports three practical points for project planning:

  • Split proximity labeling is most useful when labeling should depend on a defined interaction, contact site, or condition-specific proximity event.
  • The method requires strong controls, including single-fragment controls, interaction-disrupting controls, localization controls, and matched biological replicates.
  • LC-MS/MS results should be interpreted as interaction-dependent proximal proteomes, not as proof that every detected protein directly binds the bait or prey.
FAQ

Frequently Asked Questions

Q: What is split proximity labeling proteomics?

Split proximity labeling proteomics uses two inactive enzyme fragments that can regain labeling activity when brought together by a protein interaction, contact site, or condition-specific proximity event. Labeled proteins are enriched and identified by LC-MS/MS.

Q: How is Split-TurboID different from full-length TurboID?

Full-length TurboID labels proteins near a bait or compartment more broadly. Split-TurboID is designed so labeling depends on reconstitution between two fragments, which can make it more suitable for interaction-dependent or contact-site-dependent questions.

Q: How is Split-APEX different from full-length APEX?

Full-length APEX can rapidly label proteins near a bait or target region. Split-APEX uses separated fragments that require proximity-based reconstitution. Because Split-APEX designs can be more context-dependent, we review feasibility before recommending it for a project.

Q: Does split enzyme reconstitution prove direct protein interaction?

No. Reconstitution can support proximity or interaction-dependent evidence, but the LC-MS/MS output represents proximal proteins near that event. It does not prove that every detected candidate directly binds the bait or prey.

Q: What kinds of projects are best suited to split proximity labeling?

This approach is best suited to protein-pair interaction studies, organelle or membrane contact-site proteomics, condition-dependent complex assembly, drug-induced proximity changes, and signaling events that are difficult to capture by standard pull-down methods.

Q: Can this service map organelle contact-site proteomes?

Yes, if the contact-site design, split fragment localization, and controls are appropriate. Organelle contact-site projects require careful review because mistargeted fragments can change the apparent protein profile.

Q: What controls are recommended for Split-TurboID or Split-APEX?

Useful controls may include single-fragment controls, interaction-deficient mutants, localization-matched controls, untreated controls, interaction-off conditions, empty-vector controls, and biological replicates. The best control set depends on your system.

Q: Can I submit samples if I already prepared split constructs or labeled cells?

Yes. Please provide the split design, cell model, labeling condition, enrichment status, controls, replicate design, and sample handling details. We can review whether the material is suitable for LC-MS/MS and how the data should be interpreted.

Q: What LC-MS/MS deliverables will I receive?

Deliverables may include raw data files, protein identification and quantification tables, reconstitution-dependent candidate lists, background-filtered enrichment tables, QC summaries, and visualization-ready result tables.

Q: Can the data support drug-treated vs control comparisons?

Yes. With matched controls and replicates, split proximity labeling proteomics can compare interaction-dependent proximal proteins between treated and control conditions.

Q: Can you provide pathway and network analysis?

Yes. Depending on project scope, we can provide GO, KEGG, or Reactome enrichment, protein interaction networks, localization or contact-site marker review, and candidate prioritization.

Q: When should I choose Co-IP-MS, AP-MS, or an imaging interaction assay instead?

Choose Co-IP-MS or AP-MS when you expect stable complexes that can survive extraction. Choose BiFC, FRET, or split luciferase when the main goal is interaction reporting. Choose split proximity labeling when you need LC-MS/MS discovery around an interaction or contact event.

Disclaimer

This service is for Research Use Only and is not intended for clinical diagnosis, treatment selection, patient management, or medical decision-making.

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