Spatial Omics Services

Reveal Biology in Its Native Spatial Context

Spatial omics enables researchers to analyze molecular information directly within intact tissues, preserving the spatial relationships that define biological function and disease progression. At Creative Proteomics, our Spatial Omics services integrate advanced imaging, molecular profiling, tissue processing, and bioinformatics to help you map transcripts, proteins, metabolites, lipids, and cellular architecture with precision.

Whether your study focuses on tumor microenvironments, tissue heterogeneity, biomarker discovery, or cross-platform multi-omics integration, we provide end-to-end support from project design to data delivery.

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What Is Spatial Omics?

Spatial omics is a powerful research approach that combines molecular profiling with spatial information, allowing scientists to examine where specific genes, proteins, metabolites, and lipids are located within tissue sections. Unlike conventional bulk or dissociated-cell methods, spatial omics preserves tissue architecture and cellular neighborhoods, enabling deeper insight into biological organization, disease mechanisms, and tissue microenvironments.

By integrating pathology, imaging, and omics technologies, spatial omics helps researchers answer questions such as how cells interact in situ, how molecular expression differs across anatomical regions, and how local microenvironments influence disease progression or therapeutic response.

Our Spatial Omics platform is designed to support a broad range of study goals, from histological characterization and molecular localization to high-dimensional tissue profiling and multi-layer data integration.

Our Service and Solutions

If you are not sure where to begin, start with your research question. We select the most appropriate platform based on your sample type, research objective, and required spatial resolution.

Tissue & Cell Preparation / Single-Cell Sorting & Isolation

Best for: When you need support with sample handling before analysis.

Spatial Transcriptomics

Best for: When you want to analyze gene expression within intact tissue.

Spatial Proteomics

Best for: When you want to map proteins and functional biomarkers in situ.

Spatial Metabolomics

Best for: When you want to investigate metabolic changes across tissue regions.

Spatial Lipidomics

Best for: When you want to study lipid distribution and lipid-related biology.

Spatial Multi-omics Integration

Best for: When you want to integrate multiple molecular layers in one project.

Digital & Molecular Pathology

Best for: When you want to study tissue structure and biomarker localization.

Our Spatial Omics Workflow

spatial omics service workflow

Platform

Our Spatial Omics services are supported by advanced platforms for:

tissue preparation and cell isolation
tissue imaging and pathology
spatial gene expression analysis
spatial protein profiling
metabolite and lipid imaging
bioinformatics and multi-omics interpretation

We select the most appropriate platform based on your sample type, research objective, and required spatial resolution.

spatial omics technology platform

Key Applications

Our platforms are designed to solve complex biological questions across a variety of fields:

Oncology & Tumor Microenvironment: Characterize immune infiltration, identify distinct tumor subpopulations, and map spatial interactions driving drug resistance.
Biomarker Discovery & Validation: Move beyond bulk biomarkers by validating spatial expression patterns and co-localization signatures.
Drug Distribution & Toxicity (PK/PD): Map the precise tissue distribution of therapeutics alongside their localized transcriptomic or proteomic effects.

Tailored Partnerships for Academia and Industry

For Academic Researchers	For Industrial Partners
Discovery-Driven: Flexible pilot studies to test new hypotheses and custom assay development.	Scale & Standardization: High-throughput processing pipelines with strict consistency.
Grant Support: Letters of support, preliminary data generation, and grant-friendly pricing structures.	Rigorous QA/QC: Standard Operating Procedures and robust quality assurance metrics at every milestone.
Publication-Ready Figures: High-resolution spatial maps and comprehensive methods write-ups.	Data Security: Secure, encrypted data transfer and strict confidentiality protocols.

Supported Sample Types

Depending on the selected workflow, we can support:

FFPE tissue sections
fresh frozen tissue sections
OCT-embedded tissues
cell pellets
cultured cells
sorted cell populations
organoids and spheroids
xenograft and animal tissues

If you are unsure whether your samples are compatible, our team can review them before project initiation.

FAQs

Do you provide bioinformatics analysis?

Yes. We offer spatial data processing, visualization, and downstream interpretation.

Can multiple omics layers be combined in one project?

Yes. Our Spatial Multi-omics Integration service is designed for cross-platform studies.

Can you help with sample preparation?

Yes. We provide upstream support, including tissue and cell preparation services.

What deliverables are included?

Deliverables may include raw data, processed data, figures, analysis results, and a final report depending on the project scope.

Learn about other Q&A .

Ready to map your tissue?

Let's design an experiment that answers your specific biological questions.

Schedule a Scientific Consultation Discuss assay design, platform selection, and customized workflows with our lead scientists.

Request a Quote Submit your project parameters for a detailed, itemized pricing estimate.

* For Research Use Only. Not for use in diagnostic procedures.

Our customer service representatives are available 24 hours a day, 7 days a week. Inquiry

From Our Clients

"I recently used their proteomics service for a project analyzing protein interactions in yeast models. The team was very responsive and helped clarify the methodology they employed, which made me feel confident in the results. The data quality was solid, with clear identification of several key proteins involved in our study. Their thorough analysis enabled me to pinpoint specific interactions that I hadn't considered before, which significantly improved the direction of my research. I appreciate their professionalism and support throughout the process."

Sarah Thompson, University of California, Berkeley

"Our lab collaborated with them on a project studying cancer biomarkers. The proteomics analysis provided was detailed and focused, specifically highlighting the differential expression of proteins between healthy and tumor samples. Their clear explanations of the data helped my team understand the biological implications. I also appreciated their willingness to revise the reports based on our feedback, ensuring that we had everything we needed for our publication. This collaborative spirit was invaluable."

Emily Rodriguez, Stanford University

"Our lab worked with them on a project studying the effects of diet on gut microbiota using proteomics. They used a label-free quantification method to analyze proteins in fecal samples before and after dietary intervention. The results showed significant changes in protein expression linked to microbial activity. This was pivotal for our hypothesis about diet-microbiota interactions. The clarity of their data presentation made it easy for our team to integrate these findings into our ongoing research."

Dr. Lisa Wong, University of Toronto

"My experience with Creative Proteomics during the mass spectrometry analysis was excellent. We sent in human saliva and mouse brain tissue samples, which they expertly analyzed using both LC-MS and GC-MS techniques. The results were invaluable, revealing key metabolites in the saliva and identifying biomarkers linked to brain function in the brain tissue."

Dr. Emily Carter, Senior Research Scientist

"The overall service from Creative Proteomics was outstanding. They made the entire process seamless and efficient, allowing us to focus on our research. We worked with leaf and root samples from various Arabidopsis genotypes for targeted metabolomics analysis. Their thorough profiling of primary and secondary metabolites gave us important insights into how the plants respond metabolically to environmental stress."

Dr. Laura Henderson, Plant Physiologist

"We had a pleasant collaboration with Creative Proteomics on mass spectrometry analysis of lipids. They conducted a detailed analysis of lipid species, providing us with important insights into lipid metabolism and its relationship with metabolic syndrome disease states."

Dr. Sarah Mitchell, Research Scientist

Online Inquiry

Please submit a detailed description of your project. We will provide you with a customized project plan to meet your research requests. You can also send emails directly to for inquiries.

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